n1:/home/phtully/bioinformatics/proj5 # perl diversity.pl

Average diversity by nuceotide position within codons:
    Codon position 1: 1.5031847133758
    Codon position 2: 1.29936305732484
    Codon position 3: 2.3296178343949

n1:/home/phtully/bioinformatics/proj5 # perl diversity.pl > diversity.output.txtn1:/home/phtully/bioinformatics/proj5 # more diversity.output.txt

Average diversity by nuceotide position within codons:
    Codon position 1: 1.5031847133758
    Codon position 2: 1.29936305732484
    Codon position 3: 2.3296178343949